PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20276.3 Da    PI: 8.3431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.5e-171664149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     krie +  r v fskR  g++KKA ELS LCda++a ++fs  gk + +
  LPERR05G09460.1 16 KRIEKTAARDVCFSKRCRGLIKKAGELSLLCDANIACVVFSRGGKAFSF 64
                     79****************************************9997766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-24867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.086868IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-23979IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-181030IPR002100Transcription factor, MADS-box
PfamPF003192.0E-191764IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-183045IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-184566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVKSKPRTGK KKIEIKRIEK TAARDVCFSK RCRGLIKKAG ELSLLCDANI ACVVFSRGGK  60
AFSFGHPSVD DVANRLASMA MGTSNNPSVG GRSHNSGEVT DILQRQLKHE HVELKKSLLT  120
HEEDKQTMEK QEMEKETVEK ETGGHLMEWL NSEVNILGVD ELEELQYKLL VVHVDVSARL  180
Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638580.12e-61PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0D9WF691e-132A0A0D9WF69_9ORYZ; Uncharacterized protein
STRINGORGLA05G0093200.16e-61(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157431316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-16AGAMOUS-like 29